Rajesh K. Murarka
Computational Biophysics and Chemistry
Associate Professor
Phone:
+91 755 269 1319
rkm@iiserb.ac.in
Rajesh K. Murarka
Computational Biophysics and Chemistry
Associate Professor
Phone:
+91 755 269 1319
rkm@iiserb.ac.in
Rajesh K. Murarka
Computational Biophysics and Chemistry
Associate Professor
Phone:
+91 755 269 1319
rkm@iiserb.ac.in
Our research program aims at development and application of state-of-the-art molecular simulation methods based on principles of statistical mechanics and quantum chemistry to understand various problems in contemporary Biophysics and Chemical Physics / Physical Chemistry. It is well recognised that the function of a biological macromolecule (proteins and nucleic acids) is made possible through fluctuations of varying amplitude and duration around the folded conformation of the molecule. These motions are not simply the inherent property of molecules held together by relatively weak interactions, but rather evolve along paths that enhance their biological effectiveness. Our research focuses on deciphering the microscopic correlations between structure, conformational dynamics (operating at different lengh and time scales) and functions of these molecules, and the molecular mechanism underlying the coupling of their motions with the surrounding solvent environments. Many eukaryotic proteins under physiological condition are structurally disordered in their isolated state (known as intrinsically disordered proteins, IDPs) and adopts well-defined tertiary structures only upon binding to their partner molecules. We are currently trying to understand the mechanism of this coupled folding and binding process exhibited by IDPs and the role of intrinsic structural disorder in determining numerous vital biological functions implicated in cell signalling and disease. Other research activities in the group include multi-scale modeling and simulations of protein folding/unfolding, aggregation, and protein-drug interactions.
Rajesh K. Murarka
Associate Professor
Computational Biophysics and Chemistry
| # | Authors | Title | Journals | Year |
|---|---|---|---|---|
| 1 | Rajesh K Murarka Midhun K Madhu |
Mechanistic Basis for GPCR Phosphorylation-Dependent Allosteric Signaling Specificity of Beta-Arrestin 1 and 2 | Journal of Chemical Information and Modeling | 2025 |
| 2 | Rajesh K. Murarka Kunal Shewani Midhun K Madhu |
Biased Signaling in Mutated Variants of Beta2-Adrenergic Receptor: Insights from Molecular Dynamics Simulations | Journal of Chemical Information and Modeling | 2024 |
| 3 | Kunal Shewani Midhun K Madhu Rajesh K Murarka |
Mechanistic insights into G-protein activation via phosphorylation mediated non-canonical pathway | Biophysical Chemistry | 2024 |
| 4 | Midhun K. Madhu Annesha Debroy Rajesh K. Murarka |
Molecular Insights into Phosphorylation-Induced Allosteric Conformational Changes in a Beta2-Adrenergic Receptor | The Journal of Physical Chemistry (A,B, and C) | 2022 |
| 5 | Moutusi Manna Rajesh K. Murarka |
Polyunsaturated Fatty Acid Modulates Membrane-Bound Monomeric alpha-Synuclein by Modulating Membrane Microenvironment through Preferential Interactions | ACS Chemical Neuroscience | 2021 |
| 6 | Mrityunjay K. Tiwari Rajesh K. Murarka |
Interaction strength of osmolytes with the anion of a salt-bridge determines its stability | Phys.Chem.Chem.Phys | 2021 |
| 7 | Sergey A. Samsonov Agnieszka G. Lipska Cezary Czaplewski Adam K. Sieradzan Rajesh K. Murarka Adam Liwo |
Theory and Practice of Coarse-Grained Molecular Dynamics of Biologically Important Systems | Biomolecules | 2021 |
| 8 | Rajesh K. Murarka Moutusi Manna |
Characterisation of Conformational Ensemble of C-Terminally Truncated Alpha-Synuclein in Aqueous Solution by Atomistic Molecular Dynamics Simulations | J. Ind. Chem. Soc. | 2019 |
| 9 | Navjeet Ahalawat Rajesh K. Murarka |
Molecular Mechanism of Nucleotide-Dependent Allosteric Regulation in AMP-Activated Protein Kinase | The Journal of Physical Chemistry (A,B, and C) | 2017 |
| 10 | Navjeet Ahalawat Rajesh K. Murarka |
Conformational changes and allosteric communications in human serum albumin due to ligand binding | Journal of Biomolecular Structure and Dynamics | 2015 |
| 11 | Rajesh Singh Navjeet Ahalawat Rajesh K. Murarka |
Activation of Corticotropin-Releasing Factor 1 Receptor: Insights from Molecular Dynamics Simulations | The Journal of Physical Chemistry (A,B, and C) | 2015 |
| 12 | Navjeet Ahalawat Simran Arora Rajesh K. Murarka |
Structural Ensemble of CD4 Cytoplasmic Tail (402-419) Reveals a Nearly Flat Free-Energy Landscape with Local Alpha-Helical Order in Aqueous Solution | The Journal of Physical Chemistry (A,B, and C) | 2015 |









